Each panel (we will call them grid) like the “Reactions” one allows applying filters. A filter on a line or a set of lines will imply a selection on the other grids. For instance, by filtering on a Pathway, one can select all the reactions corresponding to this pathway and see them displayed in the Reactions grid. Filters may be specific for each MetExplore element.
- Filters can be accessed by right clicking on lines.
- Multiple selection can be achieved by keeping the Ctrl key down
- Delete filter: this is present in all filters and will remove current filter.
BioSource page allows to choose which biosource is gonna be used for the current session.
Select BioSource: allows selecting the current BioSource
Metabolites are affected to compartments in SBML models. Thus reactions, especially transport reactions, may have substrates in one compartments and products in another. When filtering on compartments we have thus two options: keeping only reactions involving metabolites in the compartment or keeping reactions with at least one metabolite in the selected compartment.
Filter with selection: this filter will select reactions if they involve at least one metabolite in the selected compartment(s)
Filter without transport: only reactions with substrates and products in the compartment are selected.
Fliter on pathways will select reactions that are annotated as belonging to these pathways. Note that some reactions may belong to one or more pathways.
Filter with selection: selection of reactions and related elements belonging to the selection of pathways.
Reactions have regular filters to select elements involved in the selection of reactions. In addition, it is possible to select reactions and put them in the cart for visualization.
Copy selection to cart: selected reactions will be added to the cart if they are not there already
Copy all to cart: all the reactions in the grid will be added to the cart if they are not there already
Filter with selection: filter all the other grids based on the selection of reactions.
Filter with selection: filter all the other grids based on the selection of metabolites.
Filter with selection: filter all the other grids based on the selection of Enzymes.
Filter with selection: filter all the other grids based on the selection of Proteins.
Filter with selection: filter all the other grids based on the selection of Genes.