Met­Ex­plore

Find­ing your path through net­work complexity

This page shows some usage exam­ples of Met­Ex­plore 1.0. For more details, please refer to the documentation.

Metabolome map­ping

Metabo­lite Map­ping with MetExplore:

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Graph based methods

Iden­ti­fi­ca­tion of choke point reactions:


Iden­ti­fi­ca­tion of choke point metabolites:


Com­put­ing the scope of a set of metabo­lites with MetExplore:

Iden­ti­fi­ca­tion of the pre­cur­sors of a set of metabo­lites with MetExplore:


Flux based methods

How to com­pute the opti­mal objec­tive func­tion value with MetExplore:

How to per­form knock-​out analy­sis with MetExplore:

How to per­form flux vari­abil­ity analy­sis in MetExplore:

How to com­pare flux vari­abil­ity between two con­di­tions with MetExplore:



How to com­pute the vari­a­tion of the opti­mal objec­tive func­tion value depend­ing on a reac­tion flux with MetExplore:


How to com­pute the vari­a­tion of the opti­mal objec­tive func­tion value depend­ing on two reac­tion fluxes:

Iden­ti­fi­ca­tion of live reac­tions, i.e those able to carry a steady state flux, with MetExplore:

Iden­ti­fi­ca­tion of essen­tial reac­tions with MetExplore:

Iden­ti­fi­ca­tion of orphan metabo­lites with MetExplore: