Mapping Result File Content
In this file, the term “biosource” refers to a single network. Each Biosource is identified by a unique identifier: it’s idMysql.
Result files are in JSON format. Each entry represents the mapping of a single biosource with the Chemical library used.
Below are the definition of each attributes present in the files. They are grouped by the nature of the information they provide.
General biosource information:
Name of the organism
Strain of the cell/organism of the biosource
Type of import used to generate the biosource
version number or date of the biosource
Name of the biosource
Source database of the biosource, this informs us of the origin of the biosource
Id MySQL of the biosource
Biosource metabolome information
- TotalNumInchi /TotalNumInchiKey
Total number of unique InChIs /InChIKeys present in the biosource
- NumberOfMetabolitwithInchi /NumberOfMetabolitwithInchikey
Number of metabolites in the biosource which has an InChI /InChIKey
Total number of metabolite mapped in the network, this counts duplicate metabolites due to compartmentalisation.
- PercentOfInchIinBioSourceMapped /PercentOfInchIKeyinBioSourceMapped
Percentage of unique InChIs /InChIKeys present in the biosource mapped by the chemical Library
Overall Coverage of the mapping on the biosource
- MappedInchi /MappedInchiKey
number of unique InChI /InChIKey mapped by the Chemical Library
Percentage of unique InChIs /InChIKeys present in the network found in the chemical library
Total number of metabolite mapped in the biosource, this counts duplicate metabolites with compartimentalisation
Id MySQL of the mapping, this will allow to retrieve information on mapped metabolites for futur analysis